PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g28850.1.p
Common NameBRADI_3g28850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 254aa    MW: 26282 Da    PI: 9.0795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g28850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057392221
                      EETTTTEEESSHHHHHHHHH CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                      +C+ Cgk+F+++  L  H+r
  Bradi3g28850.1.p 73 PCTECGKRFPSWKALFGHMR 92
                      6******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.917299IPR007087Zinc finger, C2H2
SMARTSM003550.00377294IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.37E-97294No hitNo description
Gene3DG3DSA:3.30.160.604.1E-47394IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-97496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-9162189No hitNo description
PfamPF139121.5E-10167191IPR007087Zinc finger, C2H2
SMARTSM003550.84167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGWRRPTIDP SNSMEPPQPP PPPPPPPRRH EMSLTLTLAL PPPALMTIPS KPRRVARCSP  60
TATGADSSTP PSPCTECGKR FPSWKALFGH MRCHPDRQWR GITPPPYLVR APPGPGASGQ  120
CFSVQEREVA ASLLMLSSGK GKKKTAAASA SASPGPSATT AENCEEHRCG VCDRGFASGQ  180
ALGGHKRCHW ERAACAAVIG GNGAGSSGAA SMSVQAAAAA AGAALDLNLP PPVRESDQPG  240
SSLNEMLDLK LGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971620.15e-64PREDICTED: zinc finger protein ZAT3-like
TrEMBLA0A0Q3FG461e-171A0A0Q3FG46_BRADI; Uncharacterized protein
STRINGBRADI3G28850.11e-158(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-20C2H2-like zinc finger protein